Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABUS39_RS10600 Genome accession   NZ_CP169859
Coordinates   2173642..2174022 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp772     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2168642..2179022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS10570 tadA 2168760..2169263 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS39_RS10575 - 2169270..2170394 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS39_RS10580 ung 2170391..2171104 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  ABUS39_RS10585 - 2171155..2171751 (-) 597 WP_000908455.1 6-carboxytetrahydropterin synthase -
  ABUS39_RS10590 gspK 2171982..2172941 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  ABUS39_RS10595 xcpW 2172941..2173642 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS39_RS10600 xcpV 2173642..2174022 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS39_RS10605 - 2174012..2174566 (-) 555 WP_000841367.1 type II secretion system protein -
  ABUS39_RS10610 - 2174576..2175184 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS39_RS10615 - 2175222..2175995 (-) 774 WP_000497304.1 TatD family hydrolase -
  ABUS39_RS10620 - 2176013..2176354 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS39_RS10625 - 2176366..2177346 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  ABUS39_RS10630 kdsB 2177358..2178119 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=1053769 ABUS39_RS10600 WP_000836911.1 2173642..2174022(-) (xcpV) [Acinetobacter baumannii strain Rp772]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1053769 ABUS39_RS10600 WP_000836911.1 2173642..2174022(-) (xcpV) [Acinetobacter baumannii strain Rp772]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAAGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment