Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS39_RS10595 Genome accession   NZ_CP169859
Coordinates   2172941..2173642 (-) Length   233 a.a.
NCBI ID   WP_000594572.1    Uniprot ID   A0A009IN88
Organism   Acinetobacter baumannii strain Rp772     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2167941..2178642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS10565 - 2168247..2168690 (-) 444 WP_001246675.1 SRPBCC family protein -
  ABUS39_RS10570 tadA 2168760..2169263 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS39_RS10575 - 2169270..2170394 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS39_RS10580 ung 2170391..2171104 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  ABUS39_RS10585 - 2171155..2171751 (-) 597 WP_000908455.1 6-carboxytetrahydropterin synthase -
  ABUS39_RS10590 gspK 2171982..2172941 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  ABUS39_RS10595 xcpW 2172941..2173642 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS39_RS10600 xcpV 2173642..2174022 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS39_RS10605 - 2174012..2174566 (-) 555 WP_000841367.1 type II secretion system protein -
  ABUS39_RS10610 - 2174576..2175184 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS39_RS10615 - 2175222..2175995 (-) 774 WP_000497304.1 TatD family hydrolase -
  ABUS39_RS10620 - 2176013..2176354 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS39_RS10625 - 2176366..2177346 (-) 981 WP_001075408.1 DNA polymerase III subunit delta' -
  ABUS39_RS10630 kdsB 2177358..2178119 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.59 Da        Isoelectric Point: 9.5501

>NTDB_id=1053768 ABUS39_RS10595 WP_000594572.1 2172941..2173642(-) (xcpW) [Acinetobacter baumannii strain Rp772]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053768 ABUS39_RS10595 WP_000594572.1 2172941..2173642(-) (xcpW) [Acinetobacter baumannii strain Rp772]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment