Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS44_RS01645 Genome accession   NZ_CP169848
Coordinates   352276..352749 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain Rp436     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347276..357749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS44_RS01620 - 347740..349845 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS44_RS01625 - 349885..350014 (-) 130 Protein_311 hypothetical protein -
  ABUS44_RS01630 rpoZ 350053..350331 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS44_RS01635 gmk 350404..351033 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS44_RS01640 ispH 351156..352106 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS44_RS01645 fimU 352276..352749 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS44_RS01650 pilV 352743..353303 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABUS44_RS01655 pilW 353304..354305 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABUS44_RS01660 pilX 354302..355120 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=1053660 ABUS44_RS01645 WP_001214061.1 352276..352749(+) (fimU) [Acinetobacter baumannii strain Rp436]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053660 ABUS44_RS01645 WP_001214061.1 352276..352749(+) (fimU) [Acinetobacter baumannii strain Rp436]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment