Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   ABUS44_RS01650 Genome accession   NZ_CP169848
Coordinates   352743..353303 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp436     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347743..358303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS44_RS01625 - 349885..350014 (-) 130 Protein_311 hypothetical protein -
  ABUS44_RS01630 rpoZ 350053..350331 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS44_RS01635 gmk 350404..351033 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS44_RS01640 ispH 351156..352106 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS44_RS01645 fimU 352276..352749 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS44_RS01650 pilV 352743..353303 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABUS44_RS01655 pilW 353304..354305 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABUS44_RS01660 pilX 354302..355120 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=1053661 ABUS44_RS01650 WP_085916952.1 352743..353303(+) (pilV) [Acinetobacter baumannii strain Rp436]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=1053661 ABUS44_RS01650 WP_085916952.1 352743..353303(+) (pilV) [Acinetobacter baumannii strain Rp436]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409

Multiple sequence alignment