Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8899_RS07040 Genome accession   NZ_AP028393
Coordinates   1373823..1374791 (+) Length   322 a.a.
NCBI ID   WP_002909661.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11457     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1368823..1379791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8899_RS07015 (B11457_13850) cdsA 1369733..1370458 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8899_RS07020 (B11457_13860) - 1370467..1370805 (-) 339 WP_002852397.1 hypothetical protein -
  R8899_RS07025 (B11457_13870) - 1370807..1372114 (-) 1308 WP_002875975.1 NFACT RNA binding domain-containing protein -
  R8899_RS07030 (B11457_13880) mobA 1372176..1372751 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  R8899_RS07035 (B11457_13890) pldA 1372748..1373737 (+) 990 WP_002909662.1 phospholipase A -
  R8899_RS07040 (B11457_13900) ceuB 1373823..1374791 (+) 969 WP_002909661.1 ABC transporter permease Machinery gene
  R8899_RS07045 (B11457_13910) ceuC 1374784..1375722 (+) 939 WP_052804296.1 iron chelate uptake ABC transporter family permease subunit -
  R8899_RS07050 (B11457_13920) ceuD 1375719..1376474 (+) 756 WP_002909660.1 ABC transporter ATP-binding protein -
  R8899_RS07055 (B11457_13930) ceuB 1376487..1377479 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8899_RS07065 (B11457_13940) - 1377705..1378259 (-) 555 WP_052804297.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35441.35 Da        Isoelectric Point: 9.6678

>NTDB_id=105366 R8899_RS07040 WP_002909661.1 1373823..1374791(+) (ceuB) [Campylobacter jejuni strain BCH-11457]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGDDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=105366 R8899_RS07040 WP_002909661.1 1373823..1374791(+) (ceuB) [Campylobacter jejuni strain BCH-11457]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGACGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment