Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS33_RS07260 | Genome accession | NZ_CP169842 |
| Coordinates | 1517066..1517446 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Rp428 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1512066..1522446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS33_RS07230 | kdsB | 1512969..1513730 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABUS33_RS07235 | - | 1513742..1514722 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABUS33_RS07240 | - | 1514734..1515075 (+) | 342 | Protein_1402 | PilZ domain-containing protein | - |
| ABUS33_RS07245 | - | 1515093..1515866 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| ABUS33_RS07250 | - | 1515904..1516512 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS33_RS07255 | - | 1516522..1517076 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABUS33_RS07260 | xcpV | 1517066..1517446 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS33_RS07265 | xcpW | 1517446..1518147 (+) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS33_RS07270 | gspK | 1518147..1519106 (+) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS33_RS07275 | - | 1519337..1519933 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS33_RS07280 | ung | 1519984..1520697 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS33_RS07285 | - | 1520694..1521818 (+) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS33_RS07290 | tadA | 1521825..1522328 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053629 ABUS33_RS07260 WP_000836911.1 1517066..1517446(+) (xcpV) [Acinetobacter baumannii strain Rp428]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053629 ABUS33_RS07260 WP_000836911.1 1517066..1517446(+) (xcpV) [Acinetobacter baumannii strain Rp428]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |