Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS33_RS07265 Genome accession   NZ_CP169842
Coordinates   1517446..1518147 (+) Length   233 a.a.
NCBI ID   WP_000594590.1    Uniprot ID   A0A427R546
Organism   Acinetobacter baumannii strain Rp428     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512446..1523147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS33_RS07230 kdsB 1512969..1513730 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS33_RS07235 - 1513742..1514722 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS33_RS07240 - 1514734..1515075 (+) 342 Protein_1402 PilZ domain-containing protein -
  ABUS33_RS07245 - 1515093..1515866 (+) 774 WP_000497301.1 TatD family hydrolase -
  ABUS33_RS07250 - 1515904..1516512 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS33_RS07255 - 1516522..1517076 (+) 555 WP_000841373.1 type II secretion system protein -
  ABUS33_RS07260 xcpV 1517066..1517446 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS33_RS07265 xcpW 1517446..1518147 (+) 702 WP_000594590.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS33_RS07270 gspK 1518147..1519106 (+) 960 WP_000301471.1 type II secretion system minor pseudopilin GspK -
  ABUS33_RS07275 - 1519337..1519933 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS33_RS07280 ung 1519984..1520697 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS33_RS07285 - 1520694..1521818 (+) 1125 WP_086241960.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS33_RS07290 tadA 1521825..1522328 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  ABUS33_RS07295 - 1522398..1522841 (+) 444 WP_001246674.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26627.52 Da        Isoelectric Point: 9.3468

>NTDB_id=1053630 ABUS33_RS07265 WP_000594590.1 1517446..1518147(+) (xcpW) [Acinetobacter baumannii strain Rp428]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWTYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053630 ABUS33_RS07265 WP_000594590.1 1517446..1518147(+) (xcpW) [Acinetobacter baumannii strain Rp428]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGACTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A427R546

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment