Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS33_RS01695 Genome accession   NZ_CP169842
Coordinates   348779..349639 (-) Length   286 a.a.
NCBI ID   WP_001152284.1    Uniprot ID   A0A3R9CN06
Organism   Acinetobacter baumannii strain Rp428     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343779..354639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS33_RS01670 - 344709..345980 (+) 1272 WP_000610365.1 tetratricopeptide repeat protein -
  ABUS33_RS01675 - 346057..346383 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS33_RS01680 rlmB 346485..347234 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS33_RS01685 - 347270..348184 (+) 915 WP_000075011.1 DMT family transporter -
  ABUS33_RS01690 coaE 348181..348777 (-) 597 WP_000874127.1 dephospho-CoA kinase -
  ABUS33_RS01695 pilD 348779..349639 (-) 861 WP_001152284.1 A24 family peptidase Machinery gene
  ABUS33_RS01700 pilC 349639..350865 (-) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS33_RS01705 pilB 350895..352607 (-) 1713 WP_001274984.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS33_RS01710 tpiA 352898..353692 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS33_RS01715 secG 353705..354034 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32189.64 Da        Isoelectric Point: 7.5058

>NTDB_id=1053614 ABUS33_RS01695 WP_001152284.1 348779..349639(-) (pilD) [Acinetobacter baumannii strain Rp428]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053614 ABUS33_RS01695 WP_001152284.1 348779..349639(-) (pilD) [Acinetobacter baumannii strain Rp428]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9CN06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Acinetobacter baumannii D1279779

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Vibrio campbellii strain DS40M4

52.555

95.804

0.503
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment