Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS09_RS07415 Genome accession   NZ_CP169839
Coordinates   1460941..1461801 (+) Length   286 a.a.
NCBI ID   WP_001152284.1    Uniprot ID   A0A3R9CN06
Organism   Acinetobacter baumannii strain Rp426     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455941..1466801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS09_RS07395 secG 1456546..1456875 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS09_RS07400 tpiA 1456888..1457682 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS09_RS07405 pilB 1457973..1459685 (+) 1713 WP_001274984.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS09_RS07410 pilC 1459715..1460941 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS09_RS07415 pilD 1460941..1461801 (+) 861 WP_001152284.1 A24 family peptidase Machinery gene
  ABUS09_RS07420 coaE 1461803..1462399 (+) 597 WP_000874127.1 dephospho-CoA kinase -
  ABUS09_RS07425 - 1462396..1463310 (-) 915 WP_000075011.1 DMT family transporter -
  ABUS09_RS07430 rlmB 1463346..1464095 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS09_RS07435 - 1464197..1464523 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS09_RS07440 - 1464600..1465871 (-) 1272 WP_000610365.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32189.64 Da        Isoelectric Point: 7.5058

>NTDB_id=1053573 ABUS09_RS07415 WP_001152284.1 1460941..1461801(+) (pilD) [Acinetobacter baumannii strain Rp426]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053573 ABUS09_RS07415 WP_001152284.1 1460941..1461801(+) (pilD) [Acinetobacter baumannii strain Rp426]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9CN06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Acinetobacter baumannii D1279779

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Vibrio campbellii strain DS40M4

52.555

95.804

0.503
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment