Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS13_RS16760 Genome accession   NZ_CP169832
Coordinates   3509137..3509997 (+) Length   286 a.a.
NCBI ID   WP_001152274.1    Uniprot ID   A0AAP1QVT1
Organism   Acinetobacter baumannii strain Lv648     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3504137..3514997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS16740 secG 3504742..3505071 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS13_RS16745 tpiA 3505084..3505878 (-) 795 WP_000016932.1 triose-phosphate isomerase -
  ABUS13_RS16750 pilB 3506169..3507881 (+) 1713 WP_001274988.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS13_RS16755 pilC 3507911..3509137 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  ABUS13_RS16760 pilD 3509137..3509997 (+) 861 WP_001152274.1 A24 family peptidase Machinery gene
  ABUS13_RS16765 coaE 3509999..3510595 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS13_RS16770 - 3510592..3511506 (-) 915 WP_000075013.1 DMT family transporter -
  ABUS13_RS16775 rlmB 3511542..3512291 (-) 750 WP_001118148.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS13_RS16780 - 3512393..3512719 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS13_RS16785 - 3512796..3514106 (-) 1311 WP_000753284.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32078.49 Da        Isoelectric Point: 7.1041

>NTDB_id=1053501 ABUS13_RS16760 WP_001152274.1 3509137..3509997(+) (pilD) [Acinetobacter baumannii strain Lv648]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053501 ABUS13_RS16760 WP_001152274.1 3509137..3509997(+) (pilD) [Acinetobacter baumannii strain Lv648]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

46.97

92.308

0.434

Multiple sequence alignment