Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS13_RS10285 | Genome accession | NZ_CP169832 |
| Coordinates | 2167604..2167984 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Lv648 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2162604..2172984
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS13_RS10255 | tadA | 2162723..2163226 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| ABUS13_RS10260 | - | 2163233..2164357 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS13_RS10265 | ung | 2164354..2165067 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS13_RS10270 | - | 2165118..2165714 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS13_RS10275 | gspK | 2165944..2166903 (-) | 960 | WP_000301460.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS13_RS10280 | xcpW | 2166903..2167604 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS13_RS10285 | xcpV | 2167604..2167984 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS13_RS10290 | - | 2167974..2168528 (-) | 555 | WP_000841367.1 | type II secretion system protein | - |
| ABUS13_RS10295 | - | 2168538..2169146 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS13_RS10300 | - | 2169184..2169957 (-) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| ABUS13_RS10305 | - | 2169975..2170316 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS13_RS10310 | - | 2170328..2171308 (-) | 981 | WP_001075413.1 | DNA polymerase III subunit delta' | - |
| ABUS13_RS10315 | kdsB | 2171320..2172081 (-) | 762 | WP_000680703.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053486 ABUS13_RS10285 WP_000836911.1 2167604..2167984(-) (xcpV) [Acinetobacter baumannii strain Lv648]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053486 ABUS13_RS10285 WP_000836911.1 2167604..2167984(-) (xcpV) [Acinetobacter baumannii strain Lv648]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAAGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAAGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |