Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS13_RS10280 Genome accession   NZ_CP169832
Coordinates   2166903..2167604 (-) Length   233 a.a.
NCBI ID   WP_000594572.1    Uniprot ID   A0A009IN88
Organism   Acinetobacter baumannii strain Lv648     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2161903..2172604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS10250 - 2162210..2162653 (-) 444 WP_001246673.1 SRPBCC family protein -
  ABUS13_RS10255 tadA 2162723..2163226 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS13_RS10260 - 2163233..2164357 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS13_RS10265 ung 2164354..2165067 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS13_RS10270 - 2165118..2165714 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  ABUS13_RS10275 gspK 2165944..2166903 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  ABUS13_RS10280 xcpW 2166903..2167604 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS13_RS10285 xcpV 2167604..2167984 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS13_RS10290 - 2167974..2168528 (-) 555 WP_000841367.1 type II secretion system protein -
  ABUS13_RS10295 - 2168538..2169146 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS13_RS10300 - 2169184..2169957 (-) 774 WP_000497302.1 TatD family hydrolase -
  ABUS13_RS10305 - 2169975..2170316 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS13_RS10310 - 2170328..2171308 (-) 981 WP_001075413.1 DNA polymerase III subunit delta' -
  ABUS13_RS10315 kdsB 2171320..2172081 (-) 762 WP_000680703.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.59 Da        Isoelectric Point: 9.5501

>NTDB_id=1053485 ABUS13_RS10280 WP_000594572.1 2166903..2167604(-) (xcpW) [Acinetobacter baumannii strain Lv648]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053485 ABUS13_RS10280 WP_000594572.1 2166903..2167604(-) (xcpW) [Acinetobacter baumannii strain Lv648]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment