Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS13_RS01695 Genome accession   NZ_CP169832
Coordinates   362045..362863 (+) Length   272 a.a.
NCBI ID   WP_000149370.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv648     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357045..367863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS01660 - 357627..357757 (-) 131 Protein_318 hypothetical protein -
  ABUS13_RS01665 rpoZ 357796..358074 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS13_RS01670 gmk 358147..358776 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS13_RS01675 ispH 358899..359849 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS13_RS01680 fimU 360019..360492 (+) 474 WP_001214063.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS13_RS01685 pilV 360486..361046 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  ABUS13_RS01690 pilW 361047..362048 (+) 1002 WP_000079194.1 PilW family protein Machinery gene
  ABUS13_RS01695 pilX 362045..362863 (+) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS13_RS01700 pilY1 362875..366729 (+) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS13_RS01705 pilY2 366740..367222 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ABUS13_RS01710 pilE 367219..367644 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28845.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1053473 ABUS13_RS01695 WP_000149370.1 362045..362863(+) (pilX) [Acinetobacter baumannii strain Lv648]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASNSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053473 ABUS13_RS01695 WP_000149370.1 362045..362863(+) (pilX) [Acinetobacter baumannii strain Lv648]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAAATTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment