Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS13_RS01680 Genome accession   NZ_CP169832
Coordinates   360019..360492 (+) Length   157 a.a.
NCBI ID   WP_001214063.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv648     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355019..365492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS01655 - 355482..357587 (-) 2106 WP_001117588.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS13_RS01660 - 357627..357757 (-) 131 Protein_318 hypothetical protein -
  ABUS13_RS01665 rpoZ 357796..358074 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS13_RS01670 gmk 358147..358776 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS13_RS01675 ispH 358899..359849 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS13_RS01680 fimU 360019..360492 (+) 474 WP_001214063.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS13_RS01685 pilV 360486..361046 (+) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  ABUS13_RS01690 pilW 361047..362048 (+) 1002 WP_000079194.1 PilW family protein Machinery gene
  ABUS13_RS01695 pilX 362045..362863 (+) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=1053470 ABUS13_RS01680 WP_001214063.1 360019..360492(+) (fimU) [Acinetobacter baumannii strain Lv648]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053470 ABUS13_RS01680 WP_001214063.1 360019..360492(+) (fimU) [Acinetobacter baumannii strain Lv648]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAATTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment