Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS35_RS10455 | Genome accession | NZ_CP169828 |
| Coordinates | 2148975..2149355 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Lv647 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2143975..2154355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS35_RS10425 | tadA | 2144093..2144596 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| ABUS35_RS10430 | - | 2144603..2145727 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS35_RS10435 | ung | 2145724..2146437 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS35_RS10440 | - | 2146488..2147084 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS35_RS10445 | gspK | 2147315..2148274 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS35_RS10450 | xcpW | 2148274..2148975 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS35_RS10455 | xcpV | 2148975..2149355 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS35_RS10460 | - | 2149345..2149899 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| ABUS35_RS10465 | - | 2149909..2150517 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS35_RS10470 | - | 2150555..2151328 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABUS35_RS10475 | - | 2151346..2151687 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS35_RS10480 | - | 2151699..2152679 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| ABUS35_RS10485 | kdsB | 2152691..2153452 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053438 ABUS35_RS10455 WP_000836911.1 2148975..2149355(-) (xcpV) [Acinetobacter baumannii strain Lv647]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053438 ABUS35_RS10455 WP_000836911.1 2148975..2149355(-) (xcpV) [Acinetobacter baumannii strain Lv647]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |