Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS35_RS10450 Genome accession   NZ_CP169828
Coordinates   2148274..2148975 (-) Length   233 a.a.
NCBI ID   WP_000594589.1    Uniprot ID   A0A9P3CZ31
Organism   Acinetobacter baumannii strain Lv647     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2143274..2153975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS35_RS10420 - 2143580..2144023 (-) 444 WP_001246675.1 SRPBCC family protein -
  ABUS35_RS10425 tadA 2144093..2144596 (-) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  ABUS35_RS10430 - 2144603..2145727 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS35_RS10435 ung 2145724..2146437 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS35_RS10440 - 2146488..2147084 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  ABUS35_RS10445 gspK 2147315..2148274 (-) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  ABUS35_RS10450 xcpW 2148274..2148975 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS35_RS10455 xcpV 2148975..2149355 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS35_RS10460 - 2149345..2149899 (-) 555 WP_000841373.1 type II secretion system protein -
  ABUS35_RS10465 - 2149909..2150517 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS35_RS10470 - 2150555..2151328 (-) 774 WP_000497298.1 TatD family hydrolase -
  ABUS35_RS10475 - 2151346..2151687 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS35_RS10480 - 2151699..2152679 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  ABUS35_RS10485 kdsB 2152691..2153452 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26639.58 Da        Isoelectric Point: 9.3468

>NTDB_id=1053437 ABUS35_RS10450 WP_000594589.1 2148274..2148975(-) (xcpW) [Acinetobacter baumannii strain Lv647]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053437 ABUS35_RS10450 WP_000594589.1 2148274..2148975(-) (xcpW) [Acinetobacter baumannii strain Lv647]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.571

100

0.996

Multiple sequence alignment