Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS37_RS17405 Genome accession   NZ_CP169809
Coordinates   3659728..3660588 (+) Length   286 a.a.
NCBI ID   WP_001152283.1    Uniprot ID   A0A009QK25
Organism   Acinetobacter baumannii strain Lv347     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3654728..3665588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS37_RS17385 secG 3655334..3655663 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS37_RS17390 tpiA 3655676..3656470 (-) 795 WP_000016932.1 triose-phosphate isomerase -
  ABUS37_RS17395 pilB 3656761..3658473 (+) 1713 WP_001274992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS37_RS17400 pilC 3658502..3659728 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  ABUS37_RS17405 pilD 3659728..3660588 (+) 861 WP_001152283.1 A24 family peptidase Machinery gene
  ABUS37_RS17410 coaE 3660590..3661186 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS37_RS17415 - 3661183..3662097 (-) 915 WP_000075020.1 DMT family transporter -
  ABUS37_RS17420 rlmB 3662133..3662882 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS37_RS17425 - 3662984..3663310 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS37_RS17430 - 3663387..3664697 (-) 1311 WP_000753283.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32144.59 Da        Isoelectric Point: 7.1041

>NTDB_id=1053310 ABUS37_RS17405 WP_001152283.1 3659728..3660588(+) (pilD) [Acinetobacter baumannii strain Lv347]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053310 ABUS37_RS17405 WP_001152283.1 3659728..3660588(+) (pilD) [Acinetobacter baumannii strain Lv347]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QK25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment