Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8922_RS02895 Genome accession   NZ_AP028390
Coordinates   550010..550660 (-) Length   216 a.a.
NCBI ID   WP_107701846.1    Uniprot ID   A0A5Y8Y8C1
Organism   Campylobacter jejuni strain BCH-11411     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 545010..555660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8922_RS02860 (B11411_05660) - 545387..546391 (+) 1005 WP_079263877.1 hypothetical protein -
  R8922_RS02865 (B11411_05670) tlyA 546388..547149 (+) 762 WP_107701847.1 TlyA family RNA methyltransferase -
  R8922_RS02870 (B11411_05680) ribF 547115..547969 (+) 855 WP_032585920.1 bifunctional riboflavin kinase/FAD synthetase -
  R8922_RS02875 (B11411_05690) cmoA 547956..548666 (+) 711 WP_079263875.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8922_RS02880 (B11411_05700) - 548683..548877 (-) 195 WP_079263876.1 EexN family lipoprotein -
  R8922_RS02885 (B11411_05710) - 548868..549308 (-) 441 WP_070296587.1 EexN family lipoprotein -
  R8922_RS02890 (B11411_05720) - 549367..549999 (-) 633 WP_004306723.1 trimeric intracellular cation channel family protein -
  R8922_RS02895 (B11411_05730) CJE0566 550010..550660 (-) 651 WP_107701846.1 DNA/RNA non-specific endonuclease Regulator
  R8922_RS02900 (B11411_05740) nth 550657..551283 (-) 627 WP_004306729.1 endonuclease III -
  R8922_RS02905 (B11411_05750) peb4 551364..552185 (+) 822 WP_070296586.1 peptidylprolyl isomerase PEB4 -
  R8922_RS02910 (B11411_05760) fbaA 552185..553249 (+) 1065 WP_002856965.1 class II fructose-bisphosphate aldolase -
  R8922_RS02915 (B11411_05770) - 553344..554786 (+) 1443 WP_107701845.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25481.16 Da        Isoelectric Point: 9.8188

>NTDB_id=105326 R8922_RS02895 WP_107701846.1 550010..550660(-) (CJE0566) [Campylobacter jejuni strain BCH-11411]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVFYNKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105326 R8922_RS02895 WP_107701846.1 550010..550660(-) (CJE0566) [Campylobacter jejuni strain BCH-11411]
ATGAAAATTTTCATCTTTTTGCTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACTCCGCAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTCCAAAGTATCGAAGTTTTAAAT
TTAGTATTTTACAATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8Y8C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment