Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABUS34_RS17555 Genome accession   NZ_CP169801
Coordinates   3625331..3626071 (-) Length   246 a.a.
NCBI ID   WP_000076106.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv782     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3620331..3631071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS17535 aroB 3620873..3621955 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS34_RS17540 aroK 3621984..3622553 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS34_RS17545 pilQ 3622565..3624730 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS34_RS17550 pilP 3624793..3625320 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS34_RS17555 pilO 3625331..3626071 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS34_RS17560 pilN 3626068..3626709 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  ABUS34_RS17565 pilM 3626709..3627767 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  ABUS34_RS17570 ponA 3627929..3630484 (+) 2556 WP_031965088.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8357

>NTDB_id=1053221 ABUS34_RS17555 WP_000076106.1 3625331..3626071(-) (pilO) [Acinetobacter baumannii strain Hv782]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWVFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1053221 ABUS34_RS17555 WP_000076106.1 3625331..3626071(-) (pilO) [Acinetobacter baumannii strain Hv782]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGGTTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment