Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8902_RS07075 Genome accession   NZ_AP028388
Coordinates   1393538..1393849 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11399     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388538..1398849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS07055 (B11399_13850) ctsE 1389409..1390968 (-) 1560 WP_317726487.1 GspE/PulE family protein Machinery gene
  R8902_RS07060 (B11399_13860) ctsX 1390958..1391545 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  R8902_RS07065 (B11399_13870) ctsP 1391549..1392157 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  R8902_RS07070 mshL 1392150..1393560 (-) 1411 Protein_1375 pilus (MSHA type) biogenesis protein MshL -
  R8902_RS07075 (B11399_13900) ctsR 1393538..1393849 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8902_RS07080 (B11399_13910) nifJ 1393873..1397433 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8902_RS07085 (B11399_13920) - 1397526..1398167 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105319 R8902_RS07075 WP_002862131.1 1393538..1393849(-) (ctsR) [Campylobacter jejuni strain BCH-11399]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105319 R8902_RS07075 WP_002862131.1 1393538..1393849(-) (ctsR) [Campylobacter jejuni strain BCH-11399]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment