Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS46_RS17195 Genome accession   NZ_CP169798
Coordinates   3588764..3589624 (+) Length   286 a.a.
NCBI ID   WP_001152273.1    Uniprot ID   A0A836M4G0
Organism   Acinetobacter baumannii strain Hv781     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3583764..3594624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS46_RS17175 secG 3584369..3584698 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS46_RS17180 tpiA 3584711..3585505 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS46_RS17185 pilB 3585796..3587508 (+) 1713 WP_031959606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS46_RS17190 pilC 3587538..3588764 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS46_RS17195 pilD 3588764..3589624 (+) 861 WP_001152273.1 A24 family peptidase Machinery gene
  ABUS46_RS17200 coaE 3589626..3590222 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS46_RS17205 - 3590219..3591133 (-) 915 WP_000075014.1 DMT family transporter -
  ABUS46_RS17210 rlmB 3591169..3591918 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS46_RS17215 - 3592020..3592346 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS46_RS17220 - 3592423..3593733 (-) 1311 WP_031959605.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32088.53 Da        Isoelectric Point: 7.1041

>NTDB_id=1053174 ABUS46_RS17195 WP_001152273.1 3588764..3589624(+) (pilD) [Acinetobacter baumannii strain Hv781]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053174 ABUS46_RS17195 WP_001152273.1 3588764..3589624(+) (pilD) [Acinetobacter baumannii strain Hv781]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment