Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8902_RS07050 Genome accession   NZ_AP028388
Coordinates   1388231..1389412 (-) Length   393 a.a.
NCBI ID   WP_032590155.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11399     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383231..1394412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS07020 (B11399_13780) - 1383777..1384118 (+) 342 WP_002784057.1 hypothetical protein -
  R8902_RS07025 (B11399_13790) flgM 1384181..1384378 (+) 198 WP_249604655.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8902_RS07030 (B11399_13800) - 1384419..1384853 (+) 435 WP_249604656.1 flagellar protein FlgN -
  R8902_RS07035 (B11399_13810) flgK 1384863..1386689 (+) 1827 WP_249604657.1 flagellar hook-associated protein FlgK -
  R8902_RS07040 (B11399_13820) - 1386706..1387470 (+) 765 WP_071170296.1 TIGR02757 family protein -
  R8902_RS07045 (B11399_13830) - 1387474..1388238 (+) 765 WP_002855301.1 TSUP family transporter -
  R8902_RS07050 (B11399_13840) ctsF 1388231..1389412 (-) 1182 WP_032590155.1 type II secretion system F family protein Machinery gene
  R8902_RS07055 (B11399_13850) ctsE 1389409..1390968 (-) 1560 WP_317726487.1 GspE/PulE family protein Machinery gene
  R8902_RS07060 (B11399_13860) ctsX 1390958..1391545 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  R8902_RS07065 (B11399_13870) ctsP 1391549..1392157 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  R8902_RS07070 mshL 1392150..1393560 (-) 1411 Protein_1375 pilus (MSHA type) biogenesis protein MshL -
  R8902_RS07075 (B11399_13900) ctsR 1393538..1393849 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45760.36 Da        Isoelectric Point: 9.0938

>NTDB_id=105315 R8902_RS07050 WP_032590155.1 1388231..1389412(-) (ctsF) [Campylobacter jejuni strain BCH-11399]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105315 R8902_RS07050 WP_032590155.1 1388231..1389412(-) (ctsF) [Campylobacter jejuni strain BCH-11399]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment