Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS26_RS17175 Genome accession   NZ_CP169795
Coordinates   3584991..3585851 (+) Length   286 a.a.
NCBI ID   WP_001152273.1    Uniprot ID   A0A836M4G0
Organism   Acinetobacter baumannii strain Hv780     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3579991..3590851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS17155 secG 3580596..3580925 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS26_RS17160 tpiA 3580938..3581732 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS26_RS17165 pilB 3582023..3583735 (+) 1713 WP_031959606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS26_RS17170 pilC 3583765..3584991 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS26_RS17175 pilD 3584991..3585851 (+) 861 WP_001152273.1 A24 family peptidase Machinery gene
  ABUS26_RS17180 coaE 3585853..3586449 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS26_RS17185 - 3586446..3587360 (-) 915 WP_000075014.1 DMT family transporter -
  ABUS26_RS17190 rlmB 3587396..3588145 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS26_RS17195 - 3588247..3588573 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS26_RS17200 - 3588650..3589960 (-) 1311 WP_031959605.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32088.53 Da        Isoelectric Point: 7.1041

>NTDB_id=1053133 ABUS26_RS17175 WP_001152273.1 3584991..3585851(+) (pilD) [Acinetobacter baumannii strain Hv780]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053133 ABUS26_RS17175 WP_001152273.1 3584991..3585851(+) (pilD) [Acinetobacter baumannii strain Hv780]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment