Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS38_RS16710 Genome accession   NZ_CP169791
Coordinates   3527493..3528353 (+) Length   286 a.a.
NCBI ID   WP_001152277.1    Uniprot ID   A0A009HWK1
Organism   Acinetobacter baumannii strain Hv770     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522493..3533353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS38_RS16690 secG 3523098..3523427 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS38_RS16695 tpiA 3523440..3524234 (-) 795 WP_000016931.1 triose-phosphate isomerase -
  ABUS38_RS16700 pilB 3524525..3526237 (+) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS38_RS16705 pilC 3526267..3527493 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  ABUS38_RS16710 pilD 3527493..3528353 (+) 861 WP_001152277.1 A24 family peptidase Machinery gene
  ABUS38_RS16715 coaE 3528355..3528951 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS38_RS16720 - 3528948..3529862 (-) 915 WP_000075011.1 DMT family transporter -
  ABUS38_RS16725 rlmB 3529898..3530647 (-) 750 WP_001118150.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS38_RS16730 - 3530749..3531075 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS38_RS16735 - 3531152..3532462 (-) 1311 WP_000753277.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32038.43 Da        Isoelectric Point: 7.1041

>NTDB_id=1053093 ABUS38_RS16710 WP_001152277.1 3527493..3528353(+) (pilD) [Acinetobacter baumannii strain Hv770]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053093 ABUS38_RS16710 WP_001152277.1 3527493..3528353(+) (pilD) [Acinetobacter baumannii strain Hv770]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATAGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment