Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8902_RS03060 Genome accession   NZ_AP028388
Coordinates   588734..589507 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11399     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 583734..594507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS03045 (B11399_05960) - 584583..586517 (-) 1935 WP_012006667.1 RNB domain-containing ribonuclease -
  R8902_RS03050 (B11399_05970) ilvC 586636..587658 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  R8902_RS03055 (B11399_05980) - 587662..588744 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  R8902_RS03060 (B11399_05990) dprA 588734..589507 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  R8902_RS03065 (B11399_06000) ruvX 589504..589887 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8902_RS03070 (B11399_06010) - 589916..590755 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8902_RS03075 (B11399_06020) msrA 590931..591428 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8902_RS03080 (B11399_06030) ppa 591469..591987 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8902_RS03085 (B11399_06040) adk 591997..592575 (-) 579 WP_002855137.1 adenylate kinase -
  R8902_RS03090 (B11399_06050) aspS 592572..594323 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=105301 R8902_RS03060 WP_002866495.1 588734..589507(+) (dprA) [Campylobacter jejuni strain BCH-11399]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105301 R8902_RS03060 WP_002866495.1 588734..589507(+) (dprA) [Campylobacter jejuni strain BCH-11399]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment