Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8902_RS02875 Genome accession   NZ_AP028388
Coordinates   548142..548792 (-) Length   216 a.a.
NCBI ID   WP_002866466.1    Uniprot ID   A0AAN4A9Z1
Organism   Campylobacter jejuni strain BCH-11399     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 543142..553792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS02840 (B11399_05540) - 543519..544523 (+) 1005 WP_079263877.1 hypothetical protein -
  R8902_RS02845 (B11399_05550) tlyA 544520..545281 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  R8902_RS02850 (B11399_05560) ribF 545247..546101 (+) 855 WP_032585920.1 bifunctional riboflavin kinase/FAD synthetase -
  R8902_RS02855 (B11399_05570) cmoA 546088..546798 (+) 711 WP_079460649.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8902_RS02860 (B11399_05580) - 546815..547009 (-) 195 WP_079263876.1 EexN family lipoprotein -
  R8902_RS02865 (B11399_05590) - 547000..547440 (-) 441 WP_002866465.1 EexN family lipoprotein -
  R8902_RS02870 (B11399_05600) - 547499..548131 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8902_RS02875 (B11399_05610) CJE0566 548142..548792 (-) 651 WP_002866466.1 DNA/RNA non-specific endonuclease Regulator
  R8902_RS02880 (B11399_05620) nth 548789..549415 (-) 627 WP_002866467.1 endonuclease III -
  R8902_RS02885 (B11399_05630) peb4 549496..550317 (+) 822 WP_002876664.1 peptidylprolyl isomerase PEB4 -
  R8902_RS02890 (B11399_05640) fbaA 550317..551381 (+) 1065 WP_308050851.1 class II fructose-bisphosphate aldolase -
  R8902_RS02895 (B11399_05650) - 551476..552918 (+) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25450.22 Da        Isoelectric Point: 9.7361

>NTDB_id=105300 R8902_RS02875 WP_002866466.1 548142..548792(-) (CJE0566) [Campylobacter jejuni strain BCH-11399]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105300 R8902_RS02875 WP_002866466.1 548142..548792(-) (CJE0566) [Campylobacter jejuni strain BCH-11399]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment