Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS31_RS16135 Genome accession   NZ_CP169785
Coordinates   3377393..3378211 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Hv652     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372393..3383211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS31_RS16120 pilE 3372610..3373035 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS31_RS16125 pilY2 3373032..3373514 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ABUS31_RS16130 pilY1 3373527..3377381 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS31_RS16135 pilX 3377393..3378211 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS31_RS16140 pilW 3378208..3379209 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABUS31_RS16145 pilV 3379210..3379770 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  ABUS31_RS16150 fimU 3379764..3380237 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS31_RS16155 ispH 3380407..3381357 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS31_RS16160 gmk 3381480..3382109 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS31_RS16165 rpoZ 3382182..3382460 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS31_RS16170 - 3382499..3382628 (+) 130 Protein_3156 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1052996 ABUS31_RS16135 WP_000149374.1 3377393..3378211(-) (pilX) [Acinetobacter baumannii strain Hv652]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1052996 ABUS31_RS16135 WP_000149374.1 3377393..3378211(-) (pilX) [Acinetobacter baumannii strain Hv652]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment