Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS31_RS16120 Genome accession   NZ_CP169785
Coordinates   3372610..3373035 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain Hv652     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367610..3378035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS31_RS16090 - 3368138..3369172 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  ABUS31_RS16095 - 3369287..3370228 (+) 942 WP_085916958.1 triacylglycerol lipase -
  ABUS31_RS16100 rplS 3370281..3370649 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS31_RS16105 trmD 3370858..3371598 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS31_RS16110 rimM 3371644..3372192 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS31_RS16115 rpsP 3372212..3372463 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS31_RS16120 pilE 3372610..3373035 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS31_RS16125 pilY2 3373032..3373514 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ABUS31_RS16130 pilY1 3373527..3377381 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=1052993 ABUS31_RS16120 WP_000788342.1 3372610..3373035(-) (pilE) [Acinetobacter baumannii strain Hv652]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1052993 ABUS31_RS16120 WP_000788342.1 3372610..3373035(-) (pilE) [Acinetobacter baumannii strain Hv652]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment