Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS03_RS09060 | Genome accession | NZ_CP169782 |
| Coordinates | 1859179..1859559 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Hv640 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1854179..1864559
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS03_RS09030 | kdsB | 1855082..1855843 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABUS03_RS09035 | - | 1855855..1856835 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABUS03_RS09040 | - | 1856847..1857188 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS03_RS09045 | - | 1857206..1857979 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| ABUS03_RS09050 | - | 1858017..1858625 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS03_RS09055 | - | 1858635..1859189 (+) | 555 | WP_000841367.1 | type II secretion system protein | - |
| ABUS03_RS09060 | xcpV | 1859179..1859559 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS03_RS09065 | xcpW | 1859559..1860260 (+) | 702 | WP_000594580.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS03_RS09070 | gspK | 1860260..1861219 (+) | 960 | WP_031960447.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS03_RS09075 | - | 1861449..1862045 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS03_RS09080 | ung | 1862096..1862809 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS03_RS09085 | - | 1862806..1863930 (+) | 1125 | WP_109067466.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS03_RS09090 | tadA | 1863937..1864440 (+) | 504 | WP_031960449.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1052942 ABUS03_RS09060 WP_000836911.1 1859179..1859559(+) (xcpV) [Acinetobacter baumannii strain Hv640]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1052942 ABUS03_RS09060 WP_000836911.1 1859179..1859559(+) (xcpV) [Acinetobacter baumannii strain Hv640]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |