Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS03_RS09065 Genome accession   NZ_CP169782
Coordinates   1859559..1860260 (+) Length   233 a.a.
NCBI ID   WP_000594580.1    Uniprot ID   A0A836YMN8
Organism   Acinetobacter baumannii strain Hv640     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854559..1865260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS09030 kdsB 1855082..1855843 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABUS03_RS09035 - 1855855..1856835 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS03_RS09040 - 1856847..1857188 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS03_RS09045 - 1857206..1857979 (+) 774 WP_000497298.1 TatD family hydrolase -
  ABUS03_RS09050 - 1858017..1858625 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS03_RS09055 - 1858635..1859189 (+) 555 WP_000841367.1 type II secretion system protein -
  ABUS03_RS09060 xcpV 1859179..1859559 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS03_RS09065 xcpW 1859559..1860260 (+) 702 WP_000594580.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS03_RS09070 gspK 1860260..1861219 (+) 960 WP_031960447.1 type II secretion system minor pseudopilin GspK -
  ABUS03_RS09075 - 1861449..1862045 (+) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS03_RS09080 ung 1862096..1862809 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS03_RS09085 - 1862806..1863930 (+) 1125 WP_109067466.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS03_RS09090 tadA 1863937..1864440 (+) 504 WP_031960449.1 tRNA adenosine(34) deaminase TadA -
  ABUS03_RS09095 - 1864510..1864953 (+) 444 WP_031960450.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26673.64 Da        Isoelectric Point: 9.5501

>NTDB_id=1052943 ABUS03_RS09065 WP_000594580.1 1859559..1860260(+) (xcpW) [Acinetobacter baumannii strain Hv640]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1052943 ABUS03_RS09065 WP_000594580.1 1859559..1860260(+) (xcpW) [Acinetobacter baumannii strain Hv640]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YMN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.712

100

0.987

Multiple sequence alignment