Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABUS02_RS17240 Genome accession   NZ_CP169779
Coordinates   3536779..3537414 (+) Length   211 a.a.
NCBI ID   WP_031961350.1    Uniprot ID   A0A836M0W8
Organism   Acinetobacter baumannii strain Hv635     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3531779..3542414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS02_RS17225 adeT2 3532839..3533825 (-) 987 WP_375565397.1 putative multidrug efflux protein AdeT2 -
  ABUS02_RS17230 - 3533905..3534720 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  ABUS02_RS17235 recG 3534741..3536786 (+) 2046 WP_016686247.1 ATP-dependent DNA helicase RecG -
  ABUS02_RS17240 comF 3536779..3537414 (+) 636 WP_031961350.1 ComF family protein Machinery gene
  ABUS02_RS17245 - 3537417..3537818 (-) 402 WP_000849705.1 NUDIX domain-containing protein -
  ABUS02_RS17250 - 3537833..3538414 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  ABUS02_RS17255 - 3538572..3539585 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  ABUS02_RS17260 - 3539655..3539942 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ABUS02_RS17265 - 3539954..3540595 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  ABUS02_RS17270 - 3540622..3541302 (-) 681 WP_031961351.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABUS02_RS17275 mlaE 3541302..3542078 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24601.73 Da        Isoelectric Point: 9.7140

>NTDB_id=1052911 ABUS02_RS17240 WP_031961350.1 3536779..3537414(+) (comF) [Acinetobacter baumannii strain Hv635]
MFKFLNPQYLFHLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1052911 ABUS02_RS17240 WP_031961350.1 3536779..3537414(+) (comF) [Acinetobacter baumannii strain Hv635]
ATGTTTAAGTTTTTAAACCCCCAGTATCTTTTTCATTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGCCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCCAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACCCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M0W8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981

Multiple sequence alignment