Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS15_RS18565 Genome accession   NZ_CP169773
Coordinates   3871013..3871873 (+) Length   286 a.a.
NCBI ID   WP_001152273.1    Uniprot ID   A0A836M4G0
Organism   Acinetobacter baumannii strain Hv431     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3866013..3876873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS15_RS18545 secG 3866618..3866947 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS15_RS18550 tpiA 3866960..3867754 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS15_RS18555 pilB 3868045..3869757 (+) 1713 WP_031959606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS15_RS18560 pilC 3869787..3871013 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS15_RS18565 pilD 3871013..3871873 (+) 861 WP_001152273.1 A24 family peptidase Machinery gene
  ABUS15_RS18570 coaE 3871875..3872471 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS15_RS18575 - 3872468..3873382 (-) 915 WP_000075014.1 DMT family transporter -
  ABUS15_RS18580 rlmB 3873418..3874167 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS15_RS18585 - 3874269..3874595 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS15_RS18590 - 3874672..3875982 (-) 1311 WP_031959605.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32088.53 Da        Isoelectric Point: 7.1041

>NTDB_id=1052830 ABUS15_RS18565 WP_001152273.1 3871013..3871873(+) (pilD) [Acinetobacter baumannii strain Hv431]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1052830 ABUS15_RS18565 WP_001152273.1 3871013..3871873(+) (pilD) [Acinetobacter baumannii strain Hv431]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M4G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment