Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8665_RS07750 Genome accession   NZ_AP028386
Coordinates   1495414..1495725 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490414..1500725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS07730 (B11348_15160) ctsE 1491283..1492842 (-) 1560 WP_032595054.1 GspE/PulE family protein Machinery gene
  R8665_RS07735 (B11348_15170) ctsX 1492832..1493419 (-) 588 WP_002899082.1 hypothetical protein Machinery gene
  R8665_RS07740 (B11348_15180) ctsP 1493423..1494031 (-) 609 WP_002899084.1 ATP-binding protein Machinery gene
  R8665_RS07745 (B11348_15190) ctsD 1494024..1495436 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8665_RS07750 (B11348_15200) ctsR 1495414..1495725 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8665_RS07755 (B11348_15210) nifJ 1495749..1499309 (-) 3561 WP_317676932.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8665_RS07760 (B11348_15220) - 1499402..1500043 (-) 642 WP_044306259.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105265 R8665_RS07750 WP_002862131.1 1495414..1495725(-) (ctsR) [Campylobacter jejuni strain BCH-11348]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105265 R8665_RS07750 WP_002862131.1 1495414..1495725(-) (ctsR) [Campylobacter jejuni strain BCH-11348]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment