Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8665_RS03430 Genome accession   NZ_AP028386
Coordinates   646324..647097 (+) Length   257 a.a.
NCBI ID   WP_002888477.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 641324..652097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS03415 (B11348_06640) - 642171..644107 (-) 1937 Protein_663 RNB domain-containing ribonuclease -
  R8665_RS03420 (B11348_06650) ilvC 644226..645248 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  R8665_RS03425 (B11348_06660) - 645252..646334 (+) 1083 WP_002904503.1 divergent polysaccharide deacetylase family protein -
  R8665_RS03430 (B11348_06670) dprA 646324..647097 (+) 774 WP_002888477.1 DNA-processing protein DprA Machinery gene
  R8665_RS03435 (B11348_06680) ruvX 647094..647477 (+) 384 WP_002871352.1 Holliday junction resolvase RuvX -
  R8665_RS03440 (B11348_06690) - 647506..648345 (+) 840 WP_079264285.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8665_RS03445 (B11348_06700) msrA 648521..649018 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8665_RS03450 (B11348_06710) ppa 649059..649577 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8665_RS03455 (B11348_06720) adk 649587..650165 (-) 579 WP_002855137.1 adenylate kinase -
  R8665_RS03460 (B11348_06730) aspS 650162..651913 (-) 1752 WP_317677222.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28774.56 Da        Isoelectric Point: 7.6510

>NTDB_id=105246 R8665_RS03430 WP_002888477.1 646324..647097(+) (dprA) [Campylobacter jejuni strain BCH-11348]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SVAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTATNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGFFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105246 R8665_RS03430 WP_002888477.1 646324..647097(+) (dprA) [Campylobacter jejuni strain BCH-11348]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCTTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTGTGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGTGAATATGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCTGTTGTAGTTGCGCAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGTTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.828

99.611

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment