Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8665_RS03235 Genome accession   NZ_AP028386
Coordinates   604395..605045 (-) Length   216 a.a.
NCBI ID   WP_044305891.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 599395..610045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS03200 (B11348_06210) - 599773..600777 (+) 1005 WP_002852264.1 membrane protein -
  R8665_RS03205 (B11348_06220) tlyA 600774..601535 (+) 762 WP_044305887.1 TlyA family RNA methyltransferase -
  R8665_RS03210 (B11348_06230) ribF 601501..602355 (+) 855 WP_044305888.1 bifunctional riboflavin kinase/FAD synthetase -
  R8665_RS03215 (B11348_06240) cmoA 602342..603052 (+) 711 WP_317677207.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8665_RS03220 (B11348_06250) - 603042..603263 (-) 222 WP_079005306.1 EexN family lipoprotein -
  R8665_RS03225 (B11348_06260) - 603254..603694 (-) 441 WP_044305890.1 EexN family lipoprotein -
  R8665_RS03230 (B11348_06270) - 603752..604384 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8665_RS03235 (B11348_06280) CJE0566 604395..605045 (-) 651 WP_044305891.1 DNA/RNA non-specific endonuclease Regulator
  R8665_RS03240 (B11348_06290) nth 605042..605668 (-) 627 WP_002866467.1 endonuclease III -
  R8665_RS03245 (B11348_06300) peb4 605749..606570 (+) 822 WP_002892290.1 peptidylprolyl isomerase PEB4 -
  R8665_RS03250 (B11348_06310) fbaA 606570..607634 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  R8665_RS03255 (B11348_06320) - 607729..609171 (+) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25474.25 Da        Isoelectric Point: 9.8188

>NTDB_id=105245 R8665_RS03235 WP_044305891.1 604395..605045(-) (CJE0566) [Campylobacter jejuni strain BCH-11348]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEN
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105245 R8665_RS03235 WP_044305891.1 604395..605045(-) (CJE0566) [Campylobacter jejuni strain BCH-11348]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTGAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAAAT
GATACAAATATACCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
TAATGCTTCTTTTAGTTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAATTGCTCAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment