Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACEPM6_RS18625 Genome accession   NZ_CP169570
Coordinates   3698409..3698846 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CIMT3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3693409..3703846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM6_RS18600 (ACEPM6_18600) - 3694429..3695565 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  ACEPM6_RS18605 (ACEPM6_18605) - 3695580..3696014 (+) 435 WP_014416871.1 RDD family protein -
  ACEPM6_RS18610 (ACEPM6_18610) - 3696131..3696409 (+) 279 WP_263612330.1 YckD family protein -
  ACEPM6_RS18615 (ACEPM6_18615) - 3696513..3697949 (+) 1437 WP_022552568.1 glycoside hydrolase family 1 protein -
  ACEPM6_RS18620 (ACEPM6_18620) nin/comJ 3697990..3698388 (-) 399 WP_022552569.1 competence protein ComJ Regulator
  ACEPM6_RS18625 (ACEPM6_18625) nucA/comI 3698409..3698846 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ACEPM6_RS18630 (ACEPM6_18630) hxlB 3699177..3699734 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  ACEPM6_RS18635 (ACEPM6_18635) hxlA 3699731..3700366 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  ACEPM6_RS18640 (ACEPM6_18640) - 3700598..3700960 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1052361 ACEPM6_RS18625 WP_003156588.1 3698409..3698846(-) (nucA/comI) [Bacillus velezensis strain CIMT3]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1052361 ACEPM6_RS18625 WP_003156588.1 3698409..3698846(-) (nucA/comI) [Bacillus velezensis strain CIMT3]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment