Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8574_RS03405 Genome accession   NZ_AP028385
Coordinates   634813..635586 (+) Length   257 a.a.
NCBI ID   WP_317644754.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11320     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 629813..640586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8574_RS03390 (B11320_06760) - 630662..632596 (-) 1935 WP_070309992.1 RNB domain-containing ribonuclease -
  R8574_RS03395 (B11320_06770) ilvC 632715..633737 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  R8574_RS03400 (B11320_06780) - 633741..634823 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  R8574_RS03405 (B11320_06790) dprA 634813..635586 (+) 774 WP_317644754.1 DNA-processing protein DprA Machinery gene
  R8574_RS03410 (B11320_06800) ruvX 635583..635966 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8574_RS03415 (B11320_06810) - 635995..636834 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8574_RS03420 (B11320_06820) msrA 637010..637507 (-) 498 WP_317644758.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8574_RS03425 (B11320_06830) ppa 637549..638067 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8574_RS03430 (B11320_06840) adk 638077..638655 (-) 579 WP_002859580.1 adenylate kinase -
  R8574_RS03435 (B11320_06850) aspS 638652..640403 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28876.67 Da        Isoelectric Point: 6.4874

>NTDB_id=105219 R8574_RS03405 WP_317644754.1 634813..635586(+) (dprA) [Campylobacter jejuni strain BCH-11320]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMVAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105219 R8574_RS03405 WP_317644754.1 634813..635586(+) (dprA) [Campylobacter jejuni strain BCH-11320]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGTAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment