Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8574_RS03210 Genome accession   NZ_AP028385
Coordinates   590052..590702 (-) Length   216 a.a.
NCBI ID   WP_002886738.1    Uniprot ID   A0AB36G702
Organism   Campylobacter jejuni strain BCH-11320     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 585052..595702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8574_RS03175 (B11320_06310) - 585430..586434 (+) 1005 WP_079264874.1 hypothetical protein -
  R8574_RS03180 (B11320_06320) tlyA 586431..587192 (+) 762 WP_317647757.1 TlyA family RNA methyltransferase -
  R8574_RS03185 (B11320_06330) ribF 587158..588012 (+) 855 WP_002884103.1 bifunctional riboflavin kinase/FAD synthetase -
  R8574_RS03190 (B11320_06340) cmoA 587999..588709 (+) 711 WP_079744398.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8574_RS03195 (B11320_06350) - 588699..588920 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8574_RS03200 (B11320_06360) - 588917..589351 (-) 435 WP_002855128.1 EexN family lipoprotein -
  R8574_RS03205 (B11320_06370) - 589409..590041 (-) 633 WP_002870070.1 trimeric intracellular cation channel family protein -
  R8574_RS03210 (B11320_06380) CJE0566 590052..590702 (-) 651 WP_002886738.1 DNA/RNA non-specific endonuclease Regulator
  R8574_RS03215 (B11320_06390) nth 590699..591325 (-) 627 WP_070313938.1 endonuclease III -
  R8574_RS03220 (B11320_06400) peb4 591406..592227 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8574_RS03225 (B11320_06410) fbaA 592227..593291 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8574_RS03230 (B11320_06420) - 593386..594828 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.13 Da        Isoelectric Point: 9.6573

>NTDB_id=105218 R8574_RS03210 WP_002886738.1 590052..590702(-) (CJE0566) [Campylobacter jejuni strain BCH-11320]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105218 R8574_RS03210 WP_002886738.1 590052..590702(-) (CJE0566) [Campylobacter jejuni strain BCH-11320]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAGCCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment