Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8610_RS07565 Genome accession   NZ_AP028384
Coordinates   1475135..1476316 (-) Length   393 a.a.
NCBI ID   WP_002921263.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11253     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470135..1481316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8610_RS07535 (B11253_14910) - 1470682..1471023 (+) 342 WP_002862122.1 hypothetical protein -
  R8610_RS07540 (B11253_14920) flgM 1471086..1471283 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8610_RS07545 (B11253_14930) - 1471323..1471757 (+) 435 WP_002856482.1 flagellar protein FlgN -
  R8610_RS07550 (B11253_14940) flgK 1471767..1473593 (+) 1827 WP_002921259.1 flagellar hook-associated protein FlgK -
  R8610_RS07555 (B11253_14950) - 1473610..1474374 (+) 765 WP_002921261.1 TIGR02757 family protein -
  R8610_RS07560 (B11253_14960) - 1474378..1475142 (+) 765 WP_002855301.1 TSUP family transporter -
  R8610_RS07565 (B11253_14970) ctsF 1475135..1476316 (-) 1182 WP_002921263.1 type II secretion system F family protein Machinery gene
  R8610_RS07570 (B11253_14980) ctsE 1476313..1477872 (-) 1560 WP_032588785.1 GspE/PulE family protein Machinery gene
  R8610_RS07575 (B11253_14990) ctsX 1477862..1478449 (-) 588 WP_002921278.1 hypothetical protein Machinery gene
  R8610_RS07580 (B11253_15000) ctsP 1478453..1479061 (-) 609 WP_002921280.1 ATP-binding protein Machinery gene
  R8610_RS07585 (B11253_15010) ctsD 1479054..1480466 (-) 1413 WP_002921282.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8610_RS07590 (B11253_15020) ctsR 1480444..1480755 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45828.48 Da        Isoelectric Point: 9.2580

>NTDB_id=105206 R8610_RS07565 WP_002921263.1 1475135..1476316(-) (ctsF) [Campylobacter jejuni strain BCH-11253]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIINIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFNQISKLREKSLETQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQVFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105206 R8610_RS07565 WP_002921263.1 1475135..1476316(-) (ctsF) [Campylobacter jejuni strain BCH-11253]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTAATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCCTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAATCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGACTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTACT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGTTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAACCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTCTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977

Multiple sequence alignment