Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   ACE4RI_RS03820 Genome accession   NZ_OZ059820
Coordinates   767152..768264 (+) Length   370 a.a.
NCBI ID   WP_000775118.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E1_22S00622-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 762152..773264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RI_RS03795 rnpA 762415..762768 (-) 354 WP_001789343.1 ribonuclease P protein component -
  ACE4RI_RS03800 rpmH 762889..763026 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  ACE4RI_RS03805 dnaA 763757..765118 (+) 1362 WP_001290435.1 chromosomal replication initiator protein DnaA -
  ACE4RI_RS03810 dnaN 765396..766529 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  ACE4RI_RS03815 yaaA 766910..767155 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  ACE4RI_RS03820 recF 767152..768264 (+) 1113 WP_000775118.1 DNA replication/repair protein RecF Machinery gene
  ACE4RI_RS03825 gyrB 768274..770208 (+) 1935 WP_000255581.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ACE4RI_RS03830 gyrA 770245..772914 (+) 2670 WP_000819085.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42459.48 Da        Isoelectric Point: 6.4362

>NTDB_id=1051986 ACE4RI_RS03820 WP_000775118.1 767152..768264(+) (recF) [Staphylococcus aureus isolate E1_22S00622-1]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSIDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1051986 ACE4RI_RS03820 WP_000775118.1 767152..768264(+) (recF) [Staphylococcus aureus isolate E1_22S00622-1]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAACGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCTATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTAT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

49.33

100

0.497