Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACEZDF_RS13450 Genome accession   NZ_CP169539
Coordinates   2941973..2942980 (+) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936973..2947980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS13430 (ACEZDF_13430) rplC 2937515..2938144 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  ACEZDF_RS13435 (ACEZDF_13435) rpsJ 2938159..2938470 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  ACEZDF_RS13440 (ACEZDF_13440) rpmE 2938927..2939148 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  ACEZDF_RS13445 (ACEZDF_13445) priA 2939444..2941648 (+) 2205 WP_054579274.1 primosomal protein N' -
  ACEZDF_RS13450 (ACEZDF_13450) cytR 2941973..2942980 (+) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  ACEZDF_RS13455 (ACEZDF_13455) ftsN 2943209..2943757 (+) 549 WP_017820300.1 cell division protein FtsN -
  ACEZDF_RS13460 (ACEZDF_13460) hslV 2943873..2944424 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  ACEZDF_RS13465 (ACEZDF_13465) hslU 2944448..2945779 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -
  ACEZDF_RS13470 (ACEZDF_13470) - 2946738..2947655 (+) 918 WP_005379538.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=1051952 ACEZDF_RS13450 WP_005379543.1 2941973..2942980(+) (cytR) [Vibrio alginolyticus strain BR53]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1051952 ACEZDF_RS13450 WP_005379543.1 2941973..2942980(+) (cytR) [Vibrio alginolyticus strain BR53]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
GGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGCAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTAAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGACAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment