Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACEZDF_RS02895 Genome accession   NZ_CP169539
Coordinates   598439..599053 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 593439..604053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS02885 (ACEZDF_02885) aceF 594719..596605 (+) 1887 WP_054579078.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  ACEZDF_RS02890 (ACEZDF_02890) lpdA 596873..598300 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  ACEZDF_RS02895 (ACEZDF_02895) opaR 598439..599053 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  ACEZDF_RS02900 (ACEZDF_02900) hpt 599373..599903 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  ACEZDF_RS02905 (ACEZDF_02905) can 599981..600649 (-) 669 WP_005379996.1 carbonate dehydratase -
  ACEZDF_RS02910 (ACEZDF_02910) - 600931..602601 (+) 1671 WP_054579101.1 SulP family inorganic anion transporter -
  ACEZDF_RS02915 (ACEZDF_02915) - 602852..603769 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=1051937 ACEZDF_RS02895 WP_005379994.1 598439..599053(-) (opaR) [Vibrio alginolyticus strain BR53]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1051937 ACEZDF_RS02895 WP_005379994.1 598439..599053(-) (opaR) [Vibrio alginolyticus strain BR53]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGCTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACGAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCGTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment