Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8618_RS02875 Genome accession   NZ_AP028383
Coordinates   543206..543856 (-) Length   216 a.a.
NCBI ID   WP_002874218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11107     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 538206..548856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8618_RS02840 (B11107_05550) - 538584..539588 (+) 1005 WP_002852264.1 membrane protein -
  R8618_RS02845 (B11107_05560) tlyA 539585..540346 (+) 762 WP_002856959.1 TlyA family RNA methyltransferase -
  R8618_RS02850 (B11107_05570) ribF 540312..541166 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  R8618_RS02855 (B11107_05580) cmoA 541153..541863 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8618_RS02860 (B11107_05590) - 541853..542074 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8618_RS02865 (B11107_05600) - 542071..542505 (-) 435 WP_002928649.1 EexN family lipoprotein -
  R8618_RS02870 (B11107_05610) - 542563..543195 (-) 633 WP_002928650.1 trimeric intracellular cation channel family protein -
  R8618_RS02875 (B11107_05620) CJE0566 543206..543856 (-) 651 WP_002874218.1 DNA/RNA non-specific endonuclease Regulator
  R8618_RS02880 (B11107_05630) nth 543853..544479 (-) 627 WP_002852225.1 endonuclease III -
  R8618_RS02885 (B11107_05640) peb4 544560..545381 (+) 822 WP_317644554.1 peptidylprolyl isomerase PEB4 -
  R8618_RS02890 (B11107_05650) fbaA 545381..546445 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8618_RS02895 (B11107_05660) - 546540..547982 (+) 1443 WP_317644557.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.09 Da        Isoelectric Point: 9.5529

>NTDB_id=105164 R8618_RS02875 WP_002874218.1 543206..543856(-) (CJE0566) [Campylobacter jejuni strain BCH-11107]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105164 R8618_RS02875 WP_002874218.1 543206..543856(-) (CJE0566) [Campylobacter jejuni strain BCH-11107]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment