Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMA510612_RS07300 Genome accession   NZ_CP007524
Coordinates   1356656..1357333 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis strain 510612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351656..1362333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS07285 (NMA510612_1598) hflX 1353250..1354428 (-) 1179 WP_002219225.1 GTPase HflX -
  NMA510612_RS07290 (NMA510612_1599) - 1354433..1355713 (-) 1281 WP_002249654.1 CAP domain-containing protein -
  NMA510612_RS15330 (NMA510612_1600) - 1355715..1355843 (+) 129 WP_009347251.1 hypothetical protein -
  NMA510612_RS07295 (NMA510612_1601) - 1355866..1356585 (-) 720 WP_002249663.1 epoxyqueuosine reductase QueH -
  NMA510612_RS07300 (NMA510612_1602) ysxA/radC 1356656..1357333 (-) 678 WP_002222553.1 RadC family protein Machinery gene
  NMA510612_RS07305 (NMA510612_1603) gshA 1357456..1358805 (-) 1350 WP_002249661.1 glutamate--cysteine ligase -
  NMA510612_RS07310 (NMA510612_1604) leuC 1359065..1360474 (+) 1410 WP_002249652.1 3-isopropylmalate dehydratase large subunit -
  NMA510612_RS07315 (NMA510612_1605) - 1360571..1360825 (+) 255 WP_002213442.1 hypothetical protein -
  NMA510612_RS07320 (NMA510612_1606) leuD 1360887..1361528 (+) 642 WP_002217111.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=105142 NMA510612_RS07300 WP_002222553.1 1356656..1357333(-) (ysxA/radC) [Neisseria meningitidis strain 510612]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=105142 NMA510612_RS07300 WP_002222553.1 1356656..1357333(-) (ysxA/radC) [Neisseria meningitidis strain 510612]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment