Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACEYZN_RS01565 Genome accession   NZ_CP169375
Coordinates   335842..336660 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain H3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330842..341660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYZN_RS01530 (ACEYZN_01530) - 331424..331554 (-) 131 Protein_292 hypothetical protein -
  ACEYZN_RS01535 (ACEYZN_01535) rpoZ 331593..331871 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACEYZN_RS01540 (ACEYZN_01540) gmk 331944..332573 (-) 630 WP_000015937.1 guanylate kinase -
  ACEYZN_RS01545 (ACEYZN_01545) ispH 332696..333646 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACEYZN_RS01550 (ACEYZN_01550) fimU 333816..334289 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACEYZN_RS01555 (ACEYZN_01555) pilV 334283..334843 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACEYZN_RS01560 (ACEYZN_01560) pilW 334844..335845 (+) 1002 WP_057093627.1 PilW family protein Machinery gene
  ACEYZN_RS01565 (ACEYZN_01565) pilX 335842..336660 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACEYZN_RS01570 (ACEYZN_01570) pilY1 336672..340526 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  ACEYZN_RS01575 (ACEYZN_01575) pilY2 340539..341021 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ACEYZN_RS01580 (ACEYZN_01580) pilE 341018..341443 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1051091 ACEYZN_RS01565 WP_000149374.1 335842..336660(+) (pilX) [Acinetobacter baumannii strain H3]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1051091 ACEYZN_RS01565 WP_000149374.1 335842..336660(+) (pilX) [Acinetobacter baumannii strain H3]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCCGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGCGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGCATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment