Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEWX4_RS12770 Genome accession   NZ_CP169369
Coordinates   2659714..2660349 (+) Length   211 a.a.
NCBI ID   WP_168383358.1    Uniprot ID   -
Organism   Acinetobacter indicus strain AIBD14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2654714..2665349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEWX4_RS12760 (ACEWX4_12760) - 2656833..2657648 (-) 816 WP_127801052.1 SDR family oxidoreductase -
  ACEWX4_RS12765 (ACEWX4_12765) recG 2657682..2659727 (+) 2046 WP_005180314.1 ATP-dependent DNA helicase RecG -
  ACEWX4_RS12770 (ACEWX4_12770) comF 2659714..2660349 (+) 636 WP_168383358.1 ComF family protein Machinery gene
  ACEWX4_RS12775 (ACEWX4_12775) - 2660374..2660775 (-) 402 WP_104489521.1 NUDIX domain-containing protein -
  ACEWX4_RS12780 (ACEWX4_12780) - 2660778..2661371 (-) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  ACEWX4_RS12785 (ACEWX4_12785) - 2661524..2662537 (+) 1014 WP_005180320.1 CorA family divalent cation transporter -
  ACEWX4_RS12790 (ACEWX4_12790) - 2662674..2662961 (-) 288 WP_286384629.1 STAS domain-containing protein -
  ACEWX4_RS12795 (ACEWX4_12795) - 2662973..2663605 (-) 633 WP_127801054.1 phospholipid-binding protein MlaC -
  ACEWX4_RS12800 (ACEWX4_12800) - 2663624..2664295 (-) 672 WP_016658517.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACEWX4_RS12805 (ACEWX4_12805) mlaE 2664295..2665074 (-) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24255.24 Da        Isoelectric Point: 8.9011

>NTDB_id=1051072 ACEWX4_RS12770 WP_168383358.1 2659714..2660349(+) (comF) [Acinetobacter indicus strain AIBD14]
MPMFKLLAHSHTLFKKLLPCQLCGSAAQQQYRVCADCLQQLPWLKASVCRQETEIQVACHYRYPVDRIIQQFKYEQQLHY
QSLLAGSLCELAYPRVQAIVPMPVAAERLAERGYHHTLLLAQVLARHLQLPIWQPVVRHHQHSQKGLSRLERLENLDQQF
QLRPDTGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1051072 ACEWX4_RS12770 WP_168383358.1 2659714..2660349(+) (comF) [Acinetobacter indicus strain AIBD14]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCATACGCTCTTTAAAAAGTTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTCTGTGCAGACTGTTTGCAACAGCTGCCGTGGCTAAAGGCCAGTGTCTGCCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATAATTCAGCAATTCAAATATGAGCAGCAATTGCATTAT
CAGTCTTTACTGGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTGCCGATGCCAGTGGCAGCCGA
GCGACTGGCGGAACGCGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGTCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCACCATCAACACAGTCAAAAAGGCTTAAGTCGACTGGAACGACTGGAGAATCTGGACCAGCAATTC
CAGCTACGGCCCGATACCGGCCGGCCCTATCGCCGGGTGTTAATTGTCGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCGCTAAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGACGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.981

99.052

0.555
  comF Acinetobacter baumannii strain A118

55.981

99.052

0.555

Multiple sequence alignment