Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   CF65_RS09530 Genome accession   NZ_CP007502
Coordinates   1986473..1987171 (-) Length   232 a.a.
NCBI ID   WP_038573332.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1981473..1992171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS09510 (CF65_02819) - 1981948..1982385 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  CF65_RS09515 (CF65_02821) rimI 1982395..1982838 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  CF65_RS09520 (CF65_02823) recC 1982840..1986256 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  CF65_RS09525 (CF65_02824) comQ 1986268..1986507 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  CF65_RS09530 (CF65_02826) comO 1986473..1987171 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  CF65_RS09535 (CF65_02827) comN 1987158..1987679 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  CF65_RS09555 (CF65_02829) pal 1988384..1988851 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  CF65_RS09560 (CF65_02830) tolB 1988866..1990146 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  CF65_RS09565 (CF65_02832) tolA 1990181..1991389 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -
  CF65_RS09570 (CF65_02834) tolR 1991406..1991828 (-) 423 WP_005545585.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26904.73 Da        Isoelectric Point: 8.9149

>NTDB_id=105093 CF65_RS09530 WP_038573332.1 1986473..1987171(-) (comO) [Aggregatibacter actinomycetemcomitans HK1651]
MMKNRAFFHVPPYHGQSLVALMISVALSSSLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLNQNMLE
TRLTYKSAVKQNCTQEECRRYTQQSACHYGGWADLLDEKEYEISQLSFDWLSEQKGIKIRLSGRFKRHKQIE

Nucleotide


Download         Length: 699 bp        

>NTDB_id=105093 CF65_RS09530 WP_038573332.1 1986473..1987171(-) (comO) [Aggregatibacter actinomycetemcomitans HK1651]
ATGATGAAGAATAGAGCGTTTTTCCACGTGCCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTCTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGCGGTTTTCGTGCCGTGAATAAT
AAATTAAAACAAAATAATATCGCCTTATTTGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGCGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTGTTCGGCTATCGACTTAACCAAAACATGCTGGAA
ACTCGTTTGACCTACAAAAGTGCGGTGAAGCAAAACTGCACACAAGAAGAATGCCGCCGTTATACGCAACAATCCGCGTG
CCATTACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTGTCGGAAC
AAAAGGGGATTAAAATTCGCCTCAGTGGACGTTTTAAACGACATAAACAGATCGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

52.041

84.483

0.44

Multiple sequence alignment