Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   CF65_RS09525 Genome accession   NZ_CP007502
Coordinates   1986268..1986507 (-) Length   79 a.a.
NCBI ID   WP_025298523.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans HK1651     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1981268..1991507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF65_RS09510 (CF65_02819) - 1981948..1982385 (+) 438 WP_025298520.1 DNA polymerase III subunit psi -
  CF65_RS09515 (CF65_02821) rimI 1982395..1982838 (+) 444 WP_025298521.1 ribosomal protein S18-alanine N-acetyltransferase -
  CF65_RS09520 (CF65_02823) recC 1982840..1986256 (-) 3417 WP_038573224.1 exodeoxyribonuclease V subunit gamma -
  CF65_RS09525 (CF65_02824) comQ 1986268..1986507 (-) 240 WP_025298523.1 DUF5374 domain-containing protein Machinery gene
  CF65_RS09530 (CF65_02826) comO 1986473..1987171 (-) 699 WP_038573332.1 type II secretion system protein J Machinery gene
  CF65_RS09535 (CF65_02827) comN 1987158..1987679 (-) 522 WP_005573910.1 type II secretion system protein Machinery gene
  CF65_RS09555 (CF65_02829) pal 1988384..1988851 (-) 468 WP_025298525.1 peptidoglycan-associated lipoprotein Pal -
  CF65_RS09560 (CF65_02830) tolB 1988866..1990146 (-) 1281 WP_005567685.1 Tol-Pal system beta propeller repeat protein TolB -
  CF65_RS09565 (CF65_02832) tolA 1990181..1991389 (-) 1209 WP_005545586.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 79 a.a.        Molecular weight: 9289.46 Da        Isoelectric Point: 9.2618

>NTDB_id=105092 CF65_RS09525 WP_025298523.1 1986268..1986507(-) (comQ) [Aggregatibacter actinomycetemcomitans HK1651]
MDVLNDINRSNNQWGNVQRKSAVEIYQRFQAIQIAENQHQRRFLGLPCESQVQQNQIRFQVICSQNQVSVKYPRGEISL

Nucleotide


Download         Length: 240 bp        

>NTDB_id=105092 CF65_RS09525 WP_025298523.1 1986268..1986507(-) (comQ) [Aggregatibacter actinomycetemcomitans HK1651]
GTGGACGTTTTAAACGACATAAACAGATCGAATAACCAATGGGGCAATGTGCAACGAAAAAGTGCGGTGGAAATTTATCA
GCGTTTTCAAGCCATCCAAATTGCCGAAAATCAGCATCAACGCCGTTTTCTCGGGTTGCCTTGTGAATCACAGGTGCAGC
AAAATCAAATTCGTTTTCAGGTGATTTGTTCGCAAAATCAGGTGTCGGTAAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(40-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

56.061

83.544

0.468

Multiple sequence alignment