Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8580_RS03025 Genome accession   NZ_AP028380
Coordinates   585698..586471 (+) Length   257 a.a.
NCBI ID   WP_063674954.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10998     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 580698..591471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8580_RS03010 (B10998_05880) - 581547..583481 (-) 1935 WP_100644233.1 RNB domain-containing ribonuclease -
  R8580_RS03015 (B10998_05890) ilvC 583600..584622 (+) 1023 WP_002866493.1 ketol-acid reductoisomerase -
  R8580_RS03020 (B10998_05900) - 584626..585708 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  R8580_RS03025 (B10998_05910) dprA 585698..586471 (+) 774 WP_063674954.1 DNA-processing protein DprA Machinery gene
  R8580_RS03030 (B10998_05920) ruvX 586468..586851 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8580_RS03035 (B10998_05930) - 586880..587719 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8580_RS03040 (B10998_05940) msrA 587895..588392 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8580_RS03045 (B10998_05950) ppa 588433..588951 (-) 519 WP_002855031.1 inorganic diphosphatase -
  R8580_RS03050 (B10998_05960) adk 588961..589539 (-) 579 WP_002855137.1 adenylate kinase -
  R8580_RS03055 (B10998_05970) aspS 589536..591287 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28682.54 Da        Isoelectric Point: 7.5960

>NTDB_id=105086 R8580_RS03025 WP_063674954.1 585698..586471(+) (dprA) [Campylobacter jejuni strain BCH-10998]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDCLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105086 R8580_RS03025 WP_063674954.1 585698..586471(+) (dprA) [Campylobacter jejuni strain BCH-10998]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTGGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTGTTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.833

100

0.988
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment