Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABGU66_RS06485 Genome accession   NZ_OZ040728
Coordinates   1338363..1339100 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate 30859_5#21     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333363..1344100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABGU66_RS06455 yfiL 1333522..1333887 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  ABGU66_RS06460 aroF 1334097..1335167 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABGU66_RS06465 tyrA 1335178..1336299 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABGU66_RS06470 pheA 1336342..1337502 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABGU66_RS06475 pheL 1337601..1337648 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABGU66_RS06480 raiA 1337752..1338093 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABGU66_RS06485 comL 1338363..1339100 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABGU66_RS06490 rluD 1339235..1340215 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABGU66_RS06495 yfiH 1340212..1340943 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  ABGU66_RS06500 clpC 1341073..1343646 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=1050797 ABGU66_RS06485 WP_000197686.1 1338363..1339100(-) (comL) [Escherichia coli isolate 30859_5#21]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1050797 ABGU66_RS06485 WP_000197686.1 1338363..1339100(-) (comL) [Escherichia coli isolate 30859_5#21]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCACCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376